From:  Immunoinformatics and tick vaccinology

Search tools, bioinformatic web server names, and URLs necessary to predict subcellular localization, protein structure, immunogenic characteristics, and some other desirable features for vaccine development

Bioinformatic web serversSearch tools names and URLs
General sequences analysisBLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi)
Pfam (https://www.ebi.ac.uk/interpro/)
MESSA (http://prodata.swmed.edu/MESSA/MESSA.cgi)
PDBsum (http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=index.html)
KEGG (https://www.genome.jp/kegg/kegg2.html)
SecretionSignalP 5.0 (https://services.healthtech.dtu.dk/service.php?SignalP-5.0)
Sigcleave (https://www.bioinformatics.nl/cgi-bin/emboss/sigcleave)
Phobius (https://phobius.sbc.su.se/index.html)
PRED-SIGNAL (http://bioinformatics.biol.uoa.gr/PRED-SIGNAL/input.jsp)
Subcellular localizationTargetP 2.0 (https://services.healthtech.dtu.dk/service.php?TargetP-2.0)
WoLF PSORT (https://www.genscript.com/wolf-psort.html)
PSORTb (https://www.psort.org/psortb/)
Transmembranal helicesTMHMM 2.0 (https://services.healthtech.dtu.dk/service.php?TMHMM-2.0)
Phobius (https://phobius.sbc.su.se/index.html)
B cell epitope predictorsABCpred (https://webs.iiitd.edu.in/raghava/abcpred/ABC_submission.html)
BepiPred 3.0 (https://services.healthtech.dtu.dk/service.php?BepiPred-3.0)
Bcepred (https://webs.iiitd.edu.in/raghava/bcepred/bcepred_submission.html)
DiscoTope (http://tools.iedb.org/discotope/)
Pepitope (http://pepitope.tau.ac.il/)
IEDB (https://www.iedb.org/)
T cell epitope predictorsNetCTLpan 1.1 (https://services.healthtech.dtu.dk/service.php?NetCTLpan-1.1)
NetMHCpan 4.0 (https://services.healthtech.dtu.dk/service.php?NetMHCpan-4.0)
TAPPred (http://crdd.osdd.net/raghava/tappred/)
ProPred-I (http://crdd.osdd.net/raghava/propred1/)
IMGT/LIGM-DB (https://www.imgt.org/ligmdb/)
IEDB (https://www.iedb.org/)
EpiJen v1.0 (http://www.ddg-pharmfac.net/epijen/EpiJen/EpiJen.htm)
IPD-MHC (https://www.ebi.ac.uk/ipd/mhc/group/BoLA/)
In silico vaccine pipelinesVaxiJen v2.0 (http://www.ddg-pharmfac.net/vaxijen/VaxiJen/VaxiJen.html)
NERVE (http://www.bio.unipd.it/molbinfo/NERVE_download.html)
VIOLIN (https://violinet.org/)
Vaxign (https://violinet.org/vaxign/)
Vacceed (http://github.com/sgoodswe/vacceed)
Return to article view