Exploration of Medicine

Table 1.

Microbial community richness and diversity indices of 16S rRNA sequences for clustering at 97% sequence similarity from 43 different preschool children

Sample name	Target reads	OTUs	ACE	Chao	Jackknife	NPShannon	Shannon	Simpson	Phy. diversity	Good’s coverage of library (%)
Control_1_1	69,780	259	297.5	284.07	307.00	3.15	3.14	0.10	409	99.93
Control_2_1	61,784	162	193.0	187.62	199.00	2.83	2.83	0.10	281	99.94
Control_3_1	53,552	236	281.7	269.60	285.00	3.22	3.21	0.09	388	99.91
Control_4_1	60,470	377	451.9	429.68	455.00	4.08	4.07	0.03	569	99.87
Control_5_1	50,717	360	406.9	386.52	421.00	3.88	3.87	0.04	556	99.88
Control_6_1	52,779	256	302.6	289.15	308.00	3.25	3.25	0.09	414	99.90
Control_7_1	49,700	327	375.9	370.98	389.06	3.95	3.94	0.03	518	99.88
Control_8_1	48,105	303	361.1	343.20	370.00	3.67	3.66	0.04	471	99.86
Control_9_1	51,099	259	311.1	298.33	319.00	3.33	3.32	0.07	416	99.88
Control_10_1	65,091	301	350.9	334.73	359.00	3.45	3.44	0.07	464	99.91
Control_11_1	51,644	360	414.7	400.68	428.00	3.61	3.60	0.05	572	99.87
Control_12_1	52,558	216	277.6	269.00	273.13	3.26	3.25	0.08	371	99.90
Control_13_1	57,434	320	371.4	352.00	385.00	3.71	3.70	0.04	472	99.89
Control_14_1	50,603	243	271.3	261.57	283.00	3.08	3.08	0.08	347	99.92
Control_15_1	55,417	325	388.3	380.86	397.82	3.60	3.60	0.07	531	99.88
Control_16_1	45,546	296	351.0	341.03	355.76	4.08	4.07	0.02	491	99.87
Control_17_1	49,059	331	411.1	389.52	411.61	3.58	3.57	0.05	540	99.84
Control_18_1	49,636	376	435.9	425.29	446.17	4.15	4.15	0.03	590	99.86
Control_19_1	56,985	189	221.0	208.50	228.00	2.88	2.87	0.09	310	99.93
Control_20_1	50,416	218	255.0	241.92	260.00	3.14	3.13	0.10	370	99.92
Control_21_1	53,712	316	356.6	342.55	372.00	3.56	3.55	0.06	449	99.90
Control_22_1	52,163	451	517.9	494.01	536.00	3.92	3.91	0.05	656	99.84
Control_23_1	52,515	219	244.9	231.75	253.00	3.29	3.29	0.07	346	99.94
Control_24_1	56,110	393	445.2	433.45	462.00	4.03	4.02	0.03	579	99.88
Control_25_1	47,746	365	448.0	422.15	449.10	3.55	3.54	0.06	583	99.82
Control_26_1	58,904	421	492.6	473.21	507.00	3.95	3.94	0.04	652	99.85
Obese_27_1	60,744	232	272.4	263.53	276.00	2.99	2.98	0.13	389	99.93
Obese_28_1	42,660	162	186.9	177.54	192.00	2.70	2.69	0.12	265	99.93
Obese_29_1	59,831	203	234.1	222.59	240.00	2.85	2.85	0.11	318	99.94
Obese_30_1	49,395	418	504.0	473.56	511.00	4.11	4.10	0.03	632	99.81
Obese_31_1	58,618	261	299.6	284.06	310.00	3.38	3.37	0.07	414	99.92
Obese_32_1	45,830	286	330.7	312.52	338.00	3.56	3.55	0.05	451	99.89
Obese_33_1	56,615	186	233.2	217.36	232.00	2.70	2.69	0.11	312	99.92
Obese_34_1	56,719	381	441.3	420.76	450.00	4.19	4.18	0.03	588	99.88
Obese_35_1	43,701	385	448.0	439.81	461.73	4.08	4.07	0.04	613	99.83
Obese_36_1	46,505	343	401.1	394.12	415.27	3.75	3.74	0.05	543	99.85
Obese_37_1	53,604	286	328.4	317.32	339.00	3.14	3.13	0.09	446	99.90
Obese_38_1	46,660	252	300.2	283.57	304.00	3.48	3.47	0.05	405	99.89
Obese_39_1	55,664	220	282.4	269.68	279.45	2.93	2.92	0.09	349	99.90
Obese_40_1	59,483	160	218.8	197.63	203.96	2.67	2.67	0.13	277	99.93
Obese_41_1	50,994	189	227.5	216.44	228.00	3.09	3.09	0.09	307	99.92
Obese_42_1	54,983	343	411.6	383.43	416.00	3.40	3.39	0.09	505	99.87
Obese_43_1	46,898	182	214.8	199.00	216.00	2.87	2.87	0.11	298	99.93

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ACE: alpha diversity index; Chao: chao1 index; Phy. diversity: phylogenetic diversity