A whole repertoire of miRNA resources
| Databases | Organism | Specification | Weblink | References |
|---|---|---|---|---|
| miRNAMap | Human, rat, fly, worm, chicken, mouse | miRNAs and target genes experimentally verified | http://mirnamap.mbc.nctu.edu.tw/ | [99, 100] |
| microRNA.org | Human, mouse | Target predictions of miRNA | http://www.microrna.org | [101] |
| PMTED | Plants | Microarray studies have revealed expression patterns of miRNA targets | http://pmted.agrinome.org | [95] |
| MtiBase | Human, mouse | miRNA-binding sites located at 5’ UTR/CDS | http://mtibase.sysu.edu.cn | [102] |
| miRGator | Human | Expression profiles, miRNA diversity, target relationship | http://mirgator.kobic.re.kr | [103, 104] |
| SomamiR DB 2.0 | Human | Somatic-mutations in miRNAs and their target-site in cancer | http://compbio.uthsc.edu/SomamiR | [105] |
| PhenomiR | Human | Expression of miRNAs differentially regulated in diseases | http://mips.helmholtz-muenchen.de/phenomir | [106] |
| DIANA miRGen v3.0 | Human, rat, mouse | Cell line specific genes transcription-start-sites (TSSs) of miRNA | http://www.microrna.gr/mirgen | [107] |
| PASmiR | Plants | A Web-accessible and literature-curated database | http://hi.ustc.edu.cn:8080/PASmiR | [108] |
| DIANA TarBase | Animals, plants, virus | Experimentally validated miRNA and gene interactions | http://www.microrna.gr/tarbase | [109] |
| miR2Disease | Human | Deregulation of miRNAs in various human diseases | http://www.mir2disease.org/ | [110] |
| mimiRNA | Human | Expressions-profile data of miRNA over various cell lines and tissues | http://mimirna.centenary.org.au | [111] |
| StarBase | Human, mouse | miRNAs, competing endogenous RNAs (ceRNAs), pan-cancer and interactions network of long ncRNAs and mRNAs from a large-scale CLIP-sequence data | http://starbase.sysu.edu.cn/ | [112, 113] |